miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Glycine soja



ABOUT THIS RECORD

ID: MNEST040639
species: Glycine soja
miRNA family: MIR1510
source: miRBase, original name: gso-MIR1510a (MI0015362)

Taxonomy by NCBI:
Glycine soja Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTTGTTTTACCTATTCCACC

miRNA*
AGGGATAGGTAAAACAATGAC

mismatches: 3
bulges: 0

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pre-miRNA
GGATTTTATGGAACTGGAGGGATAGGTAAAACAATGACTGCTGTATAAGTAATTGTTATAGTTAGTTGTTGTTTTACCTATTCCACCCATTCCATGTATC
C


dot-bracket secondary structure
((((..(((((((..((.((((((((((((((((..((((((((((((....))).))))).))))..)))))))))))))))).))..))))))).)))
)



SIMILARITIES
miRBase gma-MIR1510a: 8e-48

PMRD gma-miR1510a: 8e-48

microPC miR1510: 2e-33
UniProt no hits

RFAM no hits

Identical with: gma-MIR1510a from miRBase (MNEST040489)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references

[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"




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